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1

Heterogeneity of tumor-induced gene expression changes in the human metabolic network

Hu, Jie, Locasale, Jason W, Bielas, Jason H, O'Sullivan, Jacintha, Sheahan, Kieran, Cantley, Lewis C, Heiden, Matthew G Vander, Vitkup, Dennis

Journal:

Nature Biotechnology

Year:

2013

Language:

english

File:

PDF, 1.21 MB

english, 2013

2

Transmission of leprosy in Qiubei County, Yunnan, China: Insights from an 8-year molecular epidemiology investigation

Xiaoman Weng, Jason Vander Heiden, Yan Xing, Jian Liu, Varalakshmi Vissa

Journal:

Infection, Genetics and Evolution

Year:

2011

Language:

english

File:

PDF, 565 KB

english, 2011

3

Cancer's insatiable appetite

Locasale, Jason W, Cantley, Lewis C, Heiden, Matthew G Vander

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 154 KB

english, 2009

4

Metabolic Regulation of Protein N-Alpha-Acetylation by Bcl-xL Promotes Cell Survival

Caroline H. Yi, Heling Pan, Jan Seebacher, Il-Ho Jang, Sven G. Hyberts, Gregory J. Heffron, Matthew G. Vander Heiden, Renliang Yang, Fupeng Li, Jason W. Locasale, Hadar Sharfi, Bo Zhai, Ricard Rodrigu

Journal:

Year:

2011

Language:

english

File:

PDF, 1.49 MB

english, 2011

5

PHGDH amplification and altered glucose metabolism in human melanoma

Edouard Mullarky, Katherine R. Mattaini, Matthew G. Vander Heiden, Lewis C. Cantley, Jason W. Locasale

Journal:

Pigment Cell & Melanoma Research

Year:

2011

Language:

english

File:

PDF, 1.43 MB

english, 2011

6

Amplification of phosphoglycerate dehydrogenase diverts glycolytic flux and contributes to oncogenesis

Locasale, Jason W, Grassian, Alexandra, Beroukhim, Rameen, Meyerson, Matthew, Wagner, Gerhard, Asara, John M, Brugge, Joan S, Vander Heiden, Matthew G, Cantley, Lewis C

Journal:

BMC Proceedings

Year:

2012

Language:

english

File:

PDF, 175 KB

english, 2012

7

Molecular, ethno-spatial epidemiology of leprosy in China: Novel insights for tracing leprosy in endemic and non endemic provinces

Weng, Xiaoman, Xing, Yan, Liu, Jian, Wang, Yonghong, Ning, Yong, Li, Ming, Wu, Wenbin, Zhang, Lianhua, Li, Wei, Jason, Vander Heiden, Vissa, Varalakshmi

Journal:

Infection, Genetics and Evolution

Year:

2013

Language:

english

File:

PDF, 1.74 MB

english, 2013

8

Influence of seasonal exposure to grass pollen on local and peripheral blood IgE repertoires in patients with allergic rhinitis

Wu, Yu-Chang B., James, Louisa K., Vander Heiden, Jason A., Uduman, Mohamed, Durham, Stephen R., Kleinstein, Steven H., Kipling, David, Gould, Hannah J.

Journal:

Journal of Allergy and Clinical Immunology

Year:

2014

Language:

english

File:

PDF, 2.13 MB

english, 2014

9

High-resolution antibody dynamics of vaccine-induced immune responses

Laserson, Uri, Vigneault, Francois, Gadala-Maria, Daniel, Yaari, Gur, Uduman, Mohamed, Vander Heiden, Jason A., Kelton, William, Taek Jung, Sang, Liu, Yi, Laserson, Jonathan, Chari, Raj, Lee, Je-Hyuk,

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.36 MB

english, 2014

10

Rewiring of glycolysis in cancer cell metabolism

Locasale, Jason W., Vander Heiden, Matthew G., Cantley, Lewis C.

Journal:

Year:

2010

Language:

english

File:

PDF, 106 KB

english, 2010

11

Models of Somatic Hypermutation Targeting and Substitution Based on Synonymous Mutations from High-Throughput Immunoglobulin Sequencing Data

Yaari, Gur, Vander Heiden, Jason A., Uduman, Mohamed, Gadala-Maria, Daniel, Gupta, Namita, Stern, Joel N. H., O’Connor, Kevin C., Hafler, David A., Laserson, Uri, Vigneault, Francois, Kleinstein, Stev

Journal:

Frontiers in Immunology

Year:

2013

Language:

english

File:

PDF, 9.30 MB

english, 2013

12

Change-O: a toolkit for analyzing large-scale B cell immunoglobulin repertoire sequencing data: Table 1.

Gupta, Namita T., Vander Heiden, Jason A., Uduman, Mohamed, Gadala-Maria, Daniel, Yaari, Gur, Kleinstein, Steven H.

Journal:

Year:

2015

Language:

english

File:

PDF, 80 KB

english, 2015

13

Serum Metabolomics Reveals Higher Levels of Polyunsaturated Fatty Acids in Lepromatous Leprosy: Potential Markers for Susceptibility and Pathogenesis

Al-Mubarak, Reem, Vander Heiden, Jason, Broeckling, Corey D., Balagon, Marivic, Brennan, Patrick J., Vissa, Varalakshmi D., Vinetz, Joseph M.

Journal:

PLoS Neglected Tropical Diseases

Year:

2011

Language:

english

File:

PDF, 517 KB

english, 2011

14

Salmonella Infection Drives Promiscuous B Cell Activation Followed by Extrafollicular Affinity Maturation

Di Niro, Roberto, Lee, Seung-Joo, Vander Heiden, Jason A., Elsner, Rebecca A., Trivedi, Nikita, Bannock, Jason M., Gupta, Namita T., Kleinstein, Steven H., Vigneault, Francois, Gilbert, Tamara J., Mef

Journal:

Year:

2015

Language:

english

File:

PDF, 2.60 MB

english, 2015

15

The mutation patterns in B-cell immunoglobulin receptors reflect the influence of selection acting at multiple time-scales

Yaari, Gur, Benichou, Jennifer I. C., Vander Heiden, Jason A., Kleinstein, Steven H., Louzoun, Yoram

Journal:

Philosophical Transactions Biological Sciences

Year:

2015

Language:

english

File:

PDF, 508 KB

english, 2015

16

Dysregulation of B Cell Repertoire Formation in Myasthenia Gravis Patients Revealed through Deep Sequencing

Vander Heiden, Jason A., Stathopoulos, Panos, Zhou, Julian Q., Chen, Luan, Gilbert, Tamara J., Bolen, Christopher R., Barohn, Richard J., Dimachkie, Mazen M., Ciafaloni, Emma, Broering, Teresa J., Vig

Journal:

The Journal of Immunology

Year:

2017

Language:

english

File:

PDF, 2.88 MB

english, 2017

17

Interleukin-10 from CD4 + follicular regulatory T cells promotes the germinal center response

Laidlaw, Brian J., Lu, Yisi, Amezquita, Robert A., Weinstein, Jason S., Vander Heiden, Jason A., Gupta, Namita T., Kleinstein, Steven H., Kaech, Susan M., Craft, Joe

Journal:

Science Immunology

Year:

2017

Language:

english

File:

PDF, 1.68 MB

english, 2017

18

Mechanisms underlying B cell immune dysregulation and autoantibody production in MuSK myasthenia gravis

Stathopoulos, Panos, Kumar, Aditya, Heiden, Jason A. Vander, Pascual-Goñi, Elba, Nowak, Richard J., O'Connor, Kevin C.

Journal:

Annals of the New York Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 529 KB

english, 2018

19

Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data

Breden, Felix, Luning Prak, Eline T., Peters, Bjoern, Rubelt, Florian, Schramm, Chaim A., Busse, Christian E., Vander Heiden, Jason A., Christley, Scott, Bukhari, Syed Ahmad Chan, Thorogood, Adrian, M

Journal:

Frontiers in Immunology

Year:

2017

Language:

english

File:

PDF, 192 KB

english, 2017

20

Mutant cellular AP-1 proteins promote expression of a subset of Epstein-Barr virus late genes in the absence of lytic viral DNA replication

Lyons, Danielle E., Yu, Kuan-ping, Vander Heiden, Jason A., Heston, Lee, Dittmer, Dirk P., El-Guindy, Ayman, Miller, George

Journal:

Journal of Virology

Year:

2018

Language:

english

File:

PDF, 1.37 MB

english, 2018

21

AIRR Community Standardized Representations for Annotated Immune Repertoires

Vander Heiden, Jason Anthony, Marquez, Susanna, Marthandan, Nishanth, Bukhari, Syed Ahmad Chan, Busse, Christian E., Corrie, Brian, Hershberg, Uri, Kleinstein, Steven H., Matsen IV, Frederick A., Ralp

Journal:

Frontiers in Immunology

Year:

2018

Language:

english

File:

PDF, 569 KB

english, 2018

22

sumrep: A Summary Statistic Framework for Immune Receptor Repertoire Comparison and Model Validation

Olson, Branden J., Moghimi, Pejvak, Schramm, Chaim A., Obraztsova, Anna, Ralph, Duncan, Vander Heiden, Jason A., Shugay, Mikhail, Shepherd, Adrian J., Lees, William, Matsen, Frederick A.

Journal:

Frontiers in Immunology

Year:

2019

Language:

english

File:

PDF, 2.46 MB

english, 2019

23

sumrep: A Summary Statistic Framework for Immune Receptor Repertoire Comparison and Model Validation

Olson, Branden J., Moghimi, Pejvak, Schramm, Chaim A., Obraztsova, Anna, Ralph, Duncan, Vander Heiden, Jason A., Shugay, Mikhail, Shepherd, Adrian J., Lees, William, Matsen, Frederick A.

Journal:

Frontiers in Immunology

Year:

2019

File:

PDF, 2.46 MB

2019

24

In silico tools for accurate HLA and KIR inference from clinical sequencing data empower immunogenetics on individual-patient and population scales

Chen, Jieming, Madireddi, Shravan, Nagarkar, Deepti, Migdal, Maciej, Vander Heiden, Jason, Chang, Diana, Mukhyala, Kiran, Selvaraj, Suresh, Kadel, Edward E, Brauer, Matthew J, Mariathasan, Sanjeev, Hu

Journal:

Briefings in Bioinformatics

Year:

2020

File:

PDF, 342 KB

2020